PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8JJ8B
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 323aa    MW: 35271.2 Da    PI: 6.1451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8JJ8BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.8e-1474125155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YI++Lq
  Araip.8JJ8B  74 QRMSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 125
                  79***************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.04E-1471129No hitNo description
SuperFamilySSF474593.53E-1872149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1372129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.43473124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1174125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-1179130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDDNNLSDIF QDKDFGGDDL FAILESLDDF TPTNTVQFPT LLESSSLPSP PTKRRKLLVP  60
PPPPSPNAAE DGQQRMSHIT VERNRRKQMN EHLSVLRSLM PCFYVKRGDQ ASIIGGVVDY  120
INELQQVLQA LEAKKQRKVY TDHVLSPRLV SSPRTSLSLP LSPRKPPLSP RLSLPISPRT  180
PQPGSPYRPP APCRLLQPAA AAASSYISPA ASISNSLEPS PTTSSASSIN DDINELVANS  240
KSAMAEVEVK FSGPHLLLKT VSQRIPGQAL KIISALEDLA LEILQVNIST ADETMLNSFT  300
IKIGIECQLS ADELAQQIQQ TFC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17485RMSHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165129.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C71e-107SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A0S3RDL21e-145A0A0S3RDL2_PHAAN; Uncharacterized protein
STRINGGLYMA06G13081.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-47bHLH family protein